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E-commerce Accounting Services That Keep Your Online Business Financially Strong 

Running an online store is more than just taking orders. You have to deal with marketplace reconciliations, GST compliance, inventory tracking, payment gateway settlements, and financial reporting. Our E-commerce Accounting Services help online sellers sort out their accounting, lift profitability, and make solid business decisions with accurate financial records. 

10+ Year

Experience

500+

Business Served

24x7

Client Support

Simplify Finances with a Leading E-commerce Accounting Company

When you sell on Amazon, Flipkart, Shopify, WooCommerce, Meesho, or your own e-commerce site, it can cause accounting headaches that aren't the same as your regular bookkeeping. Reconciliation of payment gateways, marketplace settlements, and inventory reconciliation continues to cause businesses headaches, while GST compliance, returns, refunds, and financial reporting are still other areas of concern. Lekhakar gives you E-commerce Accounting Services that make the money side simpler, keep the books more accurate, and show you exactly how the online business is doing. 

Our e-commerce accountants work with D2C brands, marketplace sellers, wholesalers, retailers, and multi-channel businesses on bookkeeping, GST accounting, bank reconciliations, inventory management, payroll, financial reporting, and compliance. Whether you sell on one marketplace or several channels, we help you set up accounting systems that can grow with the business. 

Financial Challenges

Common E-commerce Accounting Challenges

Running an online business involves managing multiple sales channels, payment processors, inventory and tax regulations. If there aren't clear steps to account, you can find yourself with reporting errors, recon issues, compliance risks and a lack of visibility of the funds. 

Marketplace Settlement Reconciliation

The more patients come through the door, the more difficult it becomes to keep all the paperwork from invoices, consultations, treatments, and billing in line.

Inventory Tracking Errors

Weak inventory accounting leads to stock mismatches, wrong product costs, bad valuations, and unreliable profit numbers.

Returns & Refund Accounting

Lots of returns, cancellations, replacements, and refunds make it hard to keep the financial records straight.

GST Compliance Challenges

As the volume of transactions increases, dealing with GST on online sales, through the marketplace, input tax credits and return filing becomes more difficult.

Payment Gateway Reconciliation

Unmatched balances and reporting gaps are common when matching transactions from Razorpay, PayU, Stripe, PayPal and other payment gateways.

Limited Financial Visibility

Without proper financial reporting, businesses find it hard to watch cash flow, profits, sales performance, and overall money health.

We Provide

Our E-commerce Accounting Services 

Accounting for an online business needs know-how in marketplace deals, payment gateway reconciliations, inventory management, GST compliance, and financial reporting. Our E-commerce Accounting Services keep the records accurate, smooth out the accounting work, and give you a full view of how the business is performing across different online platforms. 

E-commerce Bookkeeping Services

Effective eCommerce bookkeeping ensures financial records are fully up-to-date. Sales, purchases, expenses, marketplace fees, refunds, inventory movement and daily money activities are recorded to ensure a well-maintained book and reliable reporting.

Marketplace Reconciliation Services

We match settlements from Amazon, Flipkart, Shopify, WooCommerce, Meesho, Myntra and other online marketplaces. We align sales, commissions, shipping, refunds, taxes and payment deductions ensuring the numbers are whole and correct.

Payment Gateway Reconciliation

We integrate transactions with payment gateways such as Razorpay, PayU, Stripe, PayPal, CCAvenue, etc. and reconcile them with our accountants. This eliminates unmatched balances, identifies discrepancies and maintains financial records accurate.

Payroll & Healthcare Staff Accounting

We track inventory movement, stock valuation, product costing, purchase transactions, and warehouse stock with clear accounting steps. This improves profit analysis and financial reporting.

GST Accounting & Compliance

We make GST accounting simpler for online businesses with accurate tax calculations, GST reconciliation, input tax credit checks, e-invoicing support, and timely GST return preparation so you stay compliant.

QuickBooks, Zoho Books, Tally & Excel Migration

Thinking of upgrading your accounting system? We move the financial data safely from QuickBooks, Zoho Books, TallyPrime, and Excel. We keep the chart of accounts, inventory records, customer and vendor masters, opening balances, past transactions, and financial reports intact for a clean switch.

Payroll & Vendor Payment Management

We handle employee payroll, reimbursements, vendor payments, marketplace expenses, salary processing, and statutory deductions through clear accounting steps that keep the money work running smoothly.

Financial Reporting & Virtual CFO Support

Custom MIS reports, Profit & Loss statements, Balance sheets, Cash flow reports, Budgeting, Profitability analysis, KPI tracking & Virtual CFO support provides you useful business insights that help you make better business decisions.

Benifits

Benefits of Professional E-commerce Accounting Services 

From keeping accurate books to smooth running operations, better profits and decisions, professional e-commerce accounting is instrumental in making online businesses running smoother than ever. The steps are clearly outlined, allowing you to handle marketplace transactions, payment gateways, inventory, compliance, and foster growth over time. 

Improved Financial Visibility

You receive well-structured, financial reports, which provide you with clear insights into your sales, costs, cash flow and profits, and help you to make informed decisions.

Accurate Marketplace Reconciliations

Structured accounting ensures marketplace settlements, commissions, shipping costs, taxes, refunds and payment deductions are matched accurately between various selling venues.

Better Inventory Management

You keep accurate inventory records, watch stock movement, improve product costing, and cut down on inventory gaps that hurt profits and financial reporting.

Stronger GST Compliance

Properly managed accounting ensures proper tax recordkeeping, structuring tax documents, making it easier to reconcile and helps ensure compliance with the rules in a timely manner.

Faster Financial Reporting

Organised bookkeeping and standard workflows let you prepare profit & loss statements, balance sheets, cash flow reports, and management reports more quickly.

Scalable Financial Operations

As your online business grows across marketplaces, products, warehouses, and sales channels, professional accounting systems handle the rising transaction numbers without losing accuracy.

WHY CHOOSE

Why Choose Lekhakar for E-commerce Accounting Services 

Good bookkeeping isn't enough for a successful ecommerce business. It requires accountants who are familiar with marketplace settlements, payment gateway reconciliation, GST compliance, inventory accounting and multi channel money management. Lekhakar delivers E-commerce Accounting Services that keep the numbers accurate, improve daily efficiency, and support steady growth. 

10+ Years of Accounting Excellence

We have over 10 years experience assisting e-commerce companies optimize bookkeeping, reporting, inventory accounting, and to create accounting methods that can scale with them.

500+ E-commerce Accounting Projects Delivered

Our team has completed bookkeeping, marketplace reconciliations, GST compliance, inventory accounting, financial reporting, payroll management, and outsourced accounting work for online businesses in different industries. Based on e-commerce bookkeeping, marketplace accounting, GST compliance, financial reporting, and accounting engagements completed between January 2024 and December 2025.

1,000+ Monthly Financial Reports Delivered

Our specialists prepare accurate profit & loss statements, balance sheets, cash flow reports, MIS reports, and custom financial dashboards that help e-commerce businesses watch profits and overall performance. Based on monthly financial reporting that is recurring and reported on active client engagements from January 2024 to December 2025.

ISO 9001:2015 & ISO/IEC 27001:2022 Certified

Our accounting services follow international quality management and information security standards. This keeps the accounting processes consistent and the financial data secure.

Dedicated E-commerce Accounting Specialists

Our accountants understand online selling platforms, marketplace settlements, payment gateway reconciliations, inventory accounting, GST compliance, and financial reporting for growing e-commerce businesses.

100% NDA-Protected Client Engagements

Strict Non-Disclosure Agreements (NDAs), secure document management, controlled access, encrypted file sharing, and standard data security practices help keep your financial records safe and prevent access to sensitive business information.

Industry-Specific Accounting Expertise

Whether it is a D2C brand, marketplace vendor, wholesaler, retailer, manufacturer, or a multi-channel company, we craft accounting to meet the unique financial requirements of e-commerce businesses.

Flexible Accounting Engagement Models

Hire dedicated accountants, monthly bookkeeping, fully outsourced accounting or project based accounting services to suit your business requirements and future growth.

Businesses We Serve 

Every online business has different accounting needs based on sales channels, transaction volumes, inventory management, payment gateways, and compliance rules. Our E-commerce Accounting Services support businesses of all sizes with accurate bookkeeping, financial reporting, GST compliance, and accounting that can scale. 

Amazon Sellers

Shopify Stores

Flipkart & Marketplace Sellers

Direct-to-Consumer (D2C) Brands

Multi-Channel E-commerce Businesses

Wholesale & Retail Businesses

Manufacturing Businesses

Growing Startups & MSMEs

Work Process

Our Healthcare Accounting Process 

Discover  

We learn about your online business model, sales channels, accounting challenges, and financial reporting needs. 

Assess  

We examine your bookkeeping, marketplace deals, stock management, GST fulfillment, and bookkeeping procedures.

Plan  

We create a tailored accounting strategy for your business, sales methods and expansion plans.

Execute  

Our accountants provide book keeping, reconciling, inventory accounting, GST compliance, payroll and financial reporting services. 

Review

We give ongoing accounting help, compliance guidance, financial reporting, and process improvements for steady growth. 

Get Started with Professional E-commerce Accounting Services 

You focus on growing the online business. Our accounting experts take care of the bookkeeping, marketplace reconciliations, inventory accounting, GST compliance, payroll, and financial reporting accurately and efficiently.

News & Blog
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Frequently Asked Questions
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Ecommerce Accounting Services include bookkeeping, marketplace reconciliation, payment gateway reconciliation, inventory accounting, GST compliance, payroll management, financial reporting, and outsourced accounting services for online businesses. 

We can offer accounting assistance to businesses on Amazon, Flipkart, Shopify, WooCommerce, Meesho, Myntra, Magento and other online marketplaces and e-commerce platforms. 

Yes. Marketplace settlement, commissions, shipping charges, taxes, refunds, payment gateway transactions with platforms like Razorpay, PayU, Stripe, PayPal and more are reconciled. 

Yes. Online businesses have our accounting professionals handle GST accounting, input tax credit reconciliation, e-invoicing support, GST return preparation and compliance documentation.

Yes. We ensure that your accounting data is securely uploaded from QuickBooks Online, Zoho Books, TallyPrime, Excel and other accounting solutions, while maintaining your financial records, inventory, customer information, vendor information and historical transactions.

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